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case western reserve university

Van den Akker Lab

Projects

 
 

Project


The overall goal of my research is to elucidate the molecular intricacies of enzyme mechanism and receptor activation and using that knowledge to develop inhibitors and activators for pharmaceutical purposes. Our projects range from cell signaling proteins such as guanylyl cyclases (blood pressure, vision, and bone growth) to beta-lactamases (responsible for the current epidemic antibiotic resistance).

Our lab employs state of the art multi-disciplinary biophysical, biochemical, crystallographic, molecular biology, and cell biology techniques. The guanylyl cyclases can be either membrane bound or soluble and are activated by either peptides or nitric oxide (NO), respectively. Our lab has recently published on new insights regarding the dimerization, NO and BAY58-2667 activation of the soluble guanylyl cyclase. Our structural studies are also aimed at developing new activators to treat cardiovascular diseases such as heart-failure, hypertension, erectile dysfunction, and atherosclerosis and involves a pre-clinical collaboration with pharmaceutical industry.

The beta-lactamase project entails the structure-function studies of these enzymes and investigating their modes of becoming resistant to antibiotics and inhibitors. We employ a novel synergistic Raman/X-ray crystallographic approach to allowed detailed time-dependence and structural information of intermediate formation of inhibitors and antibiotics. We have used this information to improve inhibition aspects of clinical and novel inhibitors via the rational drug design cycle. Our structure-based drug design efforts to combat antibiotic resistance involves clinician researchers, a medicinal chemist team, and structural biologists as well as pharmaceutical industry connections (this project is in collaboration with Drs. Bonomo, Helfand, Carey, and Buynak).

Guanylyl cyclases


beta-lactamase